For proper remote starting, also sure the MUX relay is always activating properly and that the connections from the RED connector of the EVO are on the right tranponder ignition wire. Also, the Yellow wire of the EVO should be on the vehicle side of that cut wire.
Flashed evo-all as per instructions to 4.06. Turned on D2D in options tab.
That option is actually only their for the newest firmware. With the 4.06 firmware, you would need to Flash the unit by selecting the D2D protocol before selecting the firmware. Once you select a vehicle, you will see a drop box called, "Choose Data-Link Protocol: ", select the D2D protocol then choose the 4.06 firmware.
Next, once the unit is flashed to 4.06, reset the EVO in the vehicle. Here is the RESET procedure. This will turn all options back to factory:
1- Hold down programming button while plugging in datalink connector.
2- Let go of button when LED is RED.
3- Push and hold button again until all three LEDs start to alternate.
4- Disconnect unit, she is now reset.
The door locks also are not working through remote starter.
Their can be a few reasons for this.. The Green/Red wire of the EVO needs to be connected to the vehicles analog door lock wire. Depending on if the vehicle has a factory alarm or not, the wire you want will be different.
When you program the EVO, what you do on step 4, sets the EVO up to the correct setting (with or without alarm). The reason for this, is that the analog door lock wire is a MUX system. The values will be different depending on if you have a factory alarm or not.
So the big questions are:
Does the vehicle have a factory alarm?
Where did you connect the green/red wire of the EVO?
How did you program the EVO?